Merge remote-tracking branch 'origin/main' into jdk25

Author: koppor

CHANGELOG.md

@@ -105,8 +105,9 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 
 ### Fixed
 
+- We fixed an issue where search results would show stale entries after deleting entries from search results. [#13984](https://github.com/JabRef/jabref/issues/13984)
 - When filename pattern is missing for linked files, pattern handling has been introduced to avoid suggesting meaningless filenames like "-". [#13735](https://github.com/JabRef/jabref/issues/13735)
-- We fixed an issue where "Specify Bib(La)TeX" tab was not focused when Bib(La)TeX was in the clipboard [#13597](https://github.com/JabRef/jabref/issues/13597)
+- We fixed an issue where "Specify Bib(La)TeX" tab was not focused when Bib(La)TeX was in the clipboard. [#13597](https://github.com/JabRef/jabref/issues/13597)
 - We fixed an issue whereby the 'About' dialog was not honouring the user's configured font preferences. [#13558](https://github.com/JabRef/jabref/issues/13558)
 - We fixed an issue where the Pagetotal column was sorting the values alphabetically instead of numerically. [#12533](https://github.com/JabRef/jabref/issues/12533)
 - We fixed an issue where URLs starting with "www." (without a protocol) in file fields caused an `IllegalArgumentException: URI is not absolute` error. [#12186](https://github.com/JabRef/jabref/issues/12186)
@@ -150,6 +151,7 @@ Note that this project **does not** adhere to [Semantic Versioning](https://semv
 - We prevented a brief flash of the default JavaFX (Modena) theme on startup. [#13877](https://github.com/JabRef/jabref/pull/13877)
 - We fixed an issue where button-bar buttons truncated long text with ellipsis. [#13877](https://github.com/JabRef/jabref/pull/13877)
 - We fixed an issue where ignoring of subdirectories via `.gitingore` patterns did not work in the "Find unlinked files dialog". [forum#5425](https://discourse.jabref.org/t/set-list-of-ignored-folders-paths/5425/6)
+- We fixed an issue where the "Applications to push entries to" list in the preferences was not sorted alphabetically. [#14058](https://github.com/JabRef/jabref/issues/14058)
 
 ### Removed
 

jabgui/src/main/java/org/jabref/gui/maintable/MainTableDataModel.java

@@ -24,6 +24,7 @@
 import org.jabref.logic.util.OptionalObjectProperty;
 import org.jabref.logic.util.TaskExecutor;
 import org.jabref.model.database.BibDatabaseContext;
+import org.jabref.model.database.event.EntriesRemovedEvent;
 import org.jabref.model.entry.BibEntry;
 import org.jabref.model.groups.GroupTreeNode;
 import org.jabref.model.search.SearchDisplayMode;
@@ -267,5 +268,19 @@ public void listen(IndexAddedOrUpdatedEvent indexAddedOrUpdatedEvent) {
         public void listen(IndexStartedEvent indexStartedEvent) {
             updateSearchMatches(searchQueryProperty.get());
         }
+
+        @Subscribe
+        public void listen(EntriesRemovedEvent removedEntriesEvent) {
+            // When entries are removed, we need to refresh the search matches
+            // to ensure the filtered list is properly updated and doesn't show stale entries
+            BackgroundTask.wrap(() -> {
+                // Re-run the current search to update the filtered results
+                if (searchQueryProperty.get().isPresent()) {
+                    setSearchMatches(indexManager.search(searchQueryProperty.get().get()));
+                } else {
+                    clearSearchMatches();
+                }
+            }).onSuccess(result -> FilteredListProxy.refilterListReflection(entriesFiltered)).executeWith(taskExecutor);
+        }
     }
 }

jabgui/src/main/java/org/jabref/gui/push/GuiPushToApplications.java

@@ -2,10 +2,12 @@
 
 import java.util.ArrayList;
 import java.util.Collections;
+import java.util.Comparator;
 import java.util.List;
 import java.util.Optional;
 
 import org.jabref.gui.DialogService;
+import org.jabref.logic.push.PushToApplication;
 import org.jabref.logic.push.PushToApplicationPreferences;
 
 public class GuiPushToApplications {
@@ -25,13 +27,16 @@ public static List<GuiPushToApplication> getAllGUIApplications(DialogService dia
                 new GuiPushToLyx(dialogService, preferences),
                 new GuiPushToSublimeText(dialogService, preferences),
                 new GuiPushToTexmaker(dialogService, preferences),
+                new GuiPushToTexShop(dialogService, preferences),
                 new GuiPushToTeXstudio(dialogService, preferences),
                 new GuiPushToTeXworks(dialogService, preferences),
                 new GuiPushToVim(dialogService, preferences),
+                new GuiPushToVScode(dialogService, preferences),
                 new GuiPushToWinEdt(dialogService, preferences),
-                new GuiPushToTexShop(dialogService, preferences),
                 new GuiPushToVScode(dialogService, preferences)));
 
+        APPLICATIONS.sort(Comparator.comparing(PushToApplication::getDisplayName, String.CASE_INSENSITIVE_ORDER));
+
         return Collections.unmodifiableList(APPLICATIONS);
     }
 

jablib/src/main/resources/l10n/JabRef_de.properties

@@ -1688,7 +1688,6 @@ Open\ one\ before\ citing.=Wählen Sie vor dem Zitieren eine aus.
 Select\ one\ before\ citing.=Wählen Sie vor dem Zitieren eine aus.
 Select\ some\ before\ citing.=Wählen Sie vor dem Zitieren einige aus.
 
-Citation\ relations=Zitations-Beziehungen
 Show\ articles\ related\ by\ citation=Artikel anzeigen, die durch Zitate verwandt sind
 Error\ while\ fetching\ citing\ entries\:\ %0=Fehler beim Abrufen von Zitationseinträgen\: %0
 
@@ -2095,10 +2094,7 @@ There\ already\ exists\ an\ external\ file\ type\ with\ the\ same\ name=Es exist
 
 Show\ tab\ 'LaTeX\ citations'=Zeige Reiter 'LaTeX Zitate'
 Show\ tab\ 'Citation\ information'=Zeige Reiter 'Zitierinformationen'
-Search\ scite.ai\ for\ Smart\ Citations=Durchsuche scite.ai nach smarten Referenzen
-See\ full\ report\ at\ [%0]=Vollständigen Bericht unter [%0] ansehen
 No\ active\ entry=Kein aktiver Eintrag
-Tallies\ for\ %0=Anzahl für %0
 
 LaTeX\ citations=LaTeX-Zitate
 Search\ for\ citations\ in\ LaTeX\ files...=Suche nach Zitaten in LaTeX Dateien...
@@ -2841,8 +2837,6 @@ Current\ JabRef\ version\:\ %0=Aktuelle JabRef Version\: %0
 Download\ development\ version=Entwicklungsversion herunterladen
 CHANGELOG=Änderungsprotokoll
 Show\ preview\ in\ entry\ table\ tooltip=Vorschau im Tooltip der Eintragstabelle anzeigen
-Citation\ information=Zitierinformationen
-Total\ Citations\:\ %0\nSupporting\:\ %1\nContradicting\:\ %2\nMentioning\:\ %3\nUnclassified\:\ %4\nCiting\ Publications\:\ %5=Gesamtzahl der Zitate\: %0\nUnterstützend\: %1\nWiderspruch\: %2\nErwähnung\: %3\nNicht klassifiziert\: %4\nZitierende Publikationen\: %5
 
 Citations\ relations\ local\ storage\ time-to-live\ (in\ days)=Zitier-Beziehungen\: Lokale Speicherung (in Tagen)
 

jablib/src/main/resources/l10n/JabRef_es.properties

@@ -1487,7 +1487,6 @@ Open\ one\ before\ citing.=Abrir uno antes de citar.
 Select\ one\ before\ citing.=Seleccione una antes de citar.
 Select\ some\ before\ citing.=Seleccione algunos antes de citar.
 
-Citation\ relations=Relaciones entre citas
 Show\ articles\ related\ by\ citation=Mostrar artículos relacionados por cita
 Error\ while\ fetching\ citing\ entries\:\ %0=Error al recuperar las entradas de cita\: %0
 
@@ -1862,8 +1861,6 @@ There\ already\ exists\ an\ external\ file\ type\ with\ the\ same\ extension=Ya
 There\ already\ exists\ an\ external\ file\ type\ with\ the\ same\ name=Ya existe un tipo de archivo externo con el mismo nombre
 
 
-Search\ scite.ai\ for\ Smart\ Citations=Buscar citas inteligentes en scite.ai
-See\ full\ report\ at\ [%0]=Vea el informe completo en [%0]
 No\ active\ entry=Ninguna entrada activa
 
 Search\ for\ citations\ in\ LaTeX\ files...=Buscar citas en archivos LaTeX...

jablib/src/main/resources/l10n/JabRef_fr.properties

@@ -1727,7 +1727,6 @@ Open\ one\ before\ citing.=Ouvrez-en un avant d'insérer un appel à référence
 Select\ one\ before\ citing.=Sélectionnez-en un avant d'insérer un appel à référence.
 Select\ some\ before\ citing.=Sélectionnez-en au moins un avant d'insérer un appel à référence.
 
-Citation\ relations=Relations de citation
 Show\ articles\ related\ by\ citation=Afficher les articles liés par citation
 Error\ while\ fetching\ cited\ entries\:\ %0=Erreur lors de la collecte des entrées citées \: %0
 Error\ while\ fetching\ citing\ entries\:\ %0=Erreur lors de la collecte des entrées citantes \: %0
@@ -2161,10 +2160,8 @@ There\ already\ exists\ an\ external\ file\ type\ with\ the\ same\ name=Il exist
 Show\ tab\ 'LaTeX\ citations'=Afficher l'onglet 'Citations LaTeX'
 Show\ tab\ 'File\ annotations'\ only\ if\ it\ contains\ highlights\ or\ comments=Afficher l'onglet 'Annotations de fichiers' uniquement s'il contient des surlignements ou des commentaires
 Show\ tab\ 'Citation\ information'=Afficher l'onglet 'Informations de citation'
-Search\ scite.ai\ for\ Smart\ Citations=Rechercher des Citations Intelligentes dans scite.ai
-See\ full\ report\ at\ [%0]=Voir le rapport complet à [%0]
+See\ full\ report=Voir le rapport complet
 No\ active\ entry=Aucune entrée active
-Tallies\ for\ %0=Décomptes pour %0
 
 LaTeX\ citations=Citations LaTeX
 Search\ for\ citations\ in\ LaTeX\ files...=Recherche de citations dans les fichiers LaTeX...
@@ -2966,8 +2963,16 @@ Current\ JabRef\ version\:\ %0=Version actuelle de JabRef \: %0
 Download\ development\ version=Télécharger la version de développement
 CHANGELOG=Journal des modifications
 Show\ preview\ in\ entry\ table\ tooltip=Afficher l'aperçu dans l'infobulle de la table des entrées
-Citation\ information=Information de citation
-Total\ Citations\:\ %0\nSupporting\:\ %1\nContradicting\:\ %2\nMentioning\:\ %3\nUnclassified\:\ %4\nCiting\ Publications\:\ %5=Citations totales \: %0\nSoutien \: %1\nContradictoire \: %2\nMention \: %3\nNon classée \: %4\nPublications citées \: %5
+Total\ Citations\:\ %0=Total des citations \: %0
+Supporting\:\ %0=Soutien \: %0
+Contradicting\:\ %0=Contredit \: %0
+Mentioning\:\ %0=Mentionne \: %0
+Unclassified\:\ %0=Non classé \: %0
+Citing\ Publications\:\ %0=Publications citant \: %0
+Citations=Citations
+Metrics\:=Métriques \:
+Relations\ provided\ by\ Semantic\ Scholar=Relations fournies par le Semantic Scholar
+Metrics\ provided\ by\ scite.ai=Métriques fournies par scite.ai
 
 Citations\ relations\ local\ storage\ time-to-live\ (in\ days)=Durée de conservation en local des relations entre citations (en jours)
 

jablib/src/main/resources/l10n/JabRef_it.properties

@@ -1722,7 +1722,6 @@ Open\ one\ before\ citing.=Aprirne uno prima di citare.
 Select\ one\ before\ citing.=Selezionane uno prima di citare.
 Select\ some\ before\ citing.=Selezionare alcuni prima di citare.
 
-Citation\ relations=Relazioni di citazione
 Show\ articles\ related\ by\ citation=Mostra articoli correlati per citazione
 Error\ while\ fetching\ cited\ entries\:\ %0=Errore durante il recupero delle voci citate\: %0
 Error\ while\ fetching\ citing\ entries\:\ %0=Errore durante il recupero delle voci citate\: %0
@@ -2156,10 +2155,8 @@ There\ already\ exists\ an\ external\ file\ type\ with\ the\ same\ name=Esiste g
 Show\ tab\ 'LaTeX\ citations'=Mostra scheda 'Citazioni LaTeX'
 Show\ tab\ 'File\ annotations'\ only\ if\ it\ contains\ highlights\ or\ comments=Mostra la scheda 'Annotazioni file' solo se contiene evidenziazioni o commenti
 Show\ tab\ 'Citation\ information'=Mostra scheda 'Informazioni sulla citazione'
-Search\ scite.ai\ for\ Smart\ Citations=Cerca scite.ai per Smart Citations
-See\ full\ report\ at\ [%0]=Vedi la relazione completa alla sezione [%0]
+See\ full\ report=Visualizza il rapporto completo
 No\ active\ entry=Nessuna voce attiva
-Tallies\ for\ %0=Conteggi per %0
 
 LaTeX\ citations=Citazioni LaTeX
 Search\ for\ citations\ in\ LaTeX\ files...=Cerca citazioni nei file LaTeX...
@@ -2933,8 +2930,16 @@ Current\ JabRef\ version\:\ %0=Versione corrente di JabRef\: %0
 Download\ development\ version=Scarica versione di sviluppo
 CHANGELOG=CHANGELOG
 Show\ preview\ in\ entry\ table\ tooltip=Mostra anteprima nel suggerimento tabella voci
-Citation\ information=Informazioni di citazione
-Total\ Citations\:\ %0\nSupporting\:\ %1\nContradicting\:\ %2\nMentioning\:\ %3\nUnclassified\:\ %4\nCiting\ Publications\:\ %5=Citazioni Totali\: %0\nIn supporto\: %1\nIn contrasto\: %2\nMenzionanti\: %3\nNon classificate\: %4\nCitanti Pubblicazioni\: %5
+Total\ Citations\:\ %0=Totale citazioni\: %0
+Supporting\:\ %0=Supporto\: %0
+Contradicting\:\ %0=Contraddicendo\: %0
+Mentioning\:\ %0=Menzionando\: %0
+Unclassified\:\ %0=Non Classificato\: %0
+Citing\ Publications\:\ %0=Pubblicazioni citanti\: %0
+Citations=Citazioni
+Metrics\:=Metriche\:
+Relations\ provided\ by\ Semantic\ Scholar=Relazioni fornite da Semantic Scholar
+Metrics\ provided\ by\ scite.ai=Metriche fornite da scite.ai
 
 Citations\ relations\ local\ storage\ time-to-live\ (in\ days)=Durata di conservazione in locale delle relazioni fra citazioni (in giorni)