Reorganize tests and update CI (#162)

Author: devmotion

.github/workflows/ci.yml renamed to .github/workflows/CI.yml

@@ -1,9 +1,11 @@
 name: CI
+
 on:
   push:
     branches:
       - master
   pull_request:
+
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
@@ -22,6 +24,11 @@ jobs:
           - windows-latest
         arch:
           - x64
+        include:
+          - version: 1
+            os: ubuntu-latest
+            arch: x64
+            coverage: true
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
@@ -40,12 +47,14 @@ jobs:
             ${{ runner.os }}-
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
+        with:
+          coverage: ${{ matrix.coverage || false }}
         env:
-          # run compat tests with Turing and Soss only with stable Julia version
-          GROUP: ${{ (matrix.version == '1' && 'All') || 'AbstractGPs' }}
+          GROUP: AbstractGPs
       - uses: julia-actions/julia-processcoverage@v1
+        if: matrix.coverage
       - name: Send coverage
-        if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
+        if: matrix.coverage
         uses: codecov/codecov-action@v1
         with:
           file: lcov.info

.github/workflows/CompatHelper.yml

@@ -1,16 +1,27 @@
 name: CompatHelper
+
 on:
   schedule:
-    - cron: '00 00 * * *'
+    - cron: 0 0 * * *
   workflow_dispatch:
+
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - name: Pkg.add("CompatHelper")
-        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-      - name: CompatHelper.main()
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "2"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          CompatHelper.main(; subdirs=["", "test", "test/ppl", "docs"])
+        shell: julia --color=yes {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
-        run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs=["", "test", "test/compat", "docs"])'

.github/workflows/PPL.yml

@@ -0,0 +1,43 @@
+name: PPL
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+
+jobs:
+  ppl:
+    name: PPL tests (Turing and Soss)
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+        with:
+          coverage: false
+        env:
+          GROUP: PPL

.gitignore

@@ -4,7 +4,7 @@
 *.ipynb
 .DS_Store
 /test/Manifest.toml
-/test/compat/Manifest.toml
+/test/ppl/Manifest.toml
 /Manifest.toml
 /dev/
 /docs/build/

README.md

@@ -1,7 +1,7 @@
 # AbstractGPs
 
 [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://JuliaGaussianProcesses.github.io/AbstractGPs.jl/dev)
-![CI](https://github.com/JuliaGaussianProcesses/AbstractGPs.jl/workflows/CI/badge.svg?branch=master)
+[![CI](https://github.com/JuliaGaussianProcesses/AbstractGPs.jl/workflows/CI/badge.svg?branch=master)](https://github.com/JuliaGaussianProcesses/AbstractGPs.jl/actions/workflows/CI.yml?query=branch%3Amaster)
 [![Codecov](https://codecov.io/gh/JuliaGaussianProcesses/AbstractGPs.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/JuliaGaussianProcesses/AbstractGPs.jl)
 [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
 [![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac)

test/compat/Project.toml renamed to test/ppl/Project.toml

@@ -6,7 +6,7 @@ using Soss: Soss, For
 using Test
 using Turing: Turing
 
-@testset "compat" begin
+@testset "PPLs" begin
     include("turing.jl")
     println(" ")
     @info "Ran Turing tests"

test/compat/runtests.jl renamed to test/ppl/runtests.jl

@@ -1,4 +1,4 @@
-@testset "soss compat" begin
+@testset "Soss" begin
     @testset "GP regression" begin
         k = SqExponentialKernel()
         y = randn(3)

test/compat/soss.jl renamed to test/ppl/soss.jl

@@ -1,4 +1,4 @@
-@testset "turing compat" begin
+@testset "Turing" begin
     @testset "GP regression" begin
         k = SqExponentialKernel()
         y = randn(3)

test/compat/turing.jl renamed to test/ppl/turing.jl

@@ -90,10 +90,10 @@ include("test_util.jl")
         end
     end
 
-    if GROUP == "All" && VERSION >= v"1.5"
-        Pkg.activate("compat")
+    if (GROUP == "All" || GROUP == "PPL") && VERSION >= v"1.5"
+        Pkg.activate("ppl")
         Pkg.develop(PackageSpec(; path=PKGDIR))
         Pkg.instantiate()
-        include(joinpath("compat", "runtests.jl"))
+        include(joinpath("ppl", "runtests.jl"))
     end
 end