Merge branch 'miguelworking' into master

Author: Miguel Leon

ODM2AdminExamplePostgresqlDB

@@ -24,6 +24,7 @@ RUN apt-get update --fix-missing && apt-get install -y postgresql postgresql-cli
 
 RUN git clone "https://github.com/miguelcleon/ODM2-Admin"
 
+
 RUN cd ODM2-Admin && latest=$(git describe --tags) && git checkout ${latest}
 
 RUN service postgresql start && su - postgres -c 'psql -U postgres -c "create database odm2_db"'

docker/Dockerfile

@@ -5,4 +5,5 @@ Requirements to run [docker image](https://hub.docker.com/r/lsetiawan/odm2admin/
 1. Docker installed on Linux, MacOS, or Windows.
 
 To run:
-$ docker run -d -p 8010:8010 --name odm2admintest lsetiawan/odm2admin:latest
+$ docker run -d -p 8010:8010 --name odm2admintest lsetiawan/odm2admin:latest
+

docker/README.md

@@ -5,7 +5,9 @@ source activate odm2adminenv
 conda install --yes -c conda-forge pytz
 
 echo "Building database..."
+
 su - postgres -c 'pg_restore -d odm2_db -1 -v "/ODM2-Admin/ODM2AdminExamplePostgresqlDB"'
+
 su - postgres -c "psql -U postgres -d postgres -c \"alter user postgres with password 'test';\""
 
 echo "Running server..."

docker/startup.sh

@@ -152,7 +152,8 @@ def handle(self, *args, **options):  # (f,fileid, databeginson,columnheaderson,
                             for j in range(numCols):
                                 # raise ValidationError(" in file " + row[j] + "
                                 # in obj column label "+dloggerfileColumns.columnlabel)
-                                if row[j] == dloggerfileColumns.columnlabel:
+                                if row[j] == dloggerfileColumns.columnlabel \
+                                        and dloggerfileColumns.columndescription !="skip":
                                     foundColumn = True
                                     dloggerfileColumns.columnnum = j
                                     rowColumnMap += [dloggerfileColumns]

odm2admin/management/commands/ProcessDataLoggerFile.py

@@ -968,7 +968,9 @@ class Dataloggerfilecolumns(models.Model):
                                                    verbose_name="instrument output variable",
                                                    db_column='instrumentoutputvariableid')
     columnlabel = models.CharField(verbose_name="column label", max_length=50)
-    columndescription = models.CharField(verbose_name="column description", max_length=5000,
+    columndescription = models.CharField(verbose_name="column description",
+                                         help_text="To disble ingestion of a column type 'skip'",
+                                         max_length=5000,
                                          blank=True)
     measurementequation = models.CharField(verbose_name="measurement equation", max_length=255,
                                            blank=True)
@@ -1054,7 +1056,7 @@ def save(self, *args, **kwargs):
         fileid = self.dataloggerfileid.dataloggerfileid
         management.call_command('ProcessDataLoggerFile', linkname,str(fileid)
                                 , str(self.databeginson), str(self.columnheaderson),
-                                False, False)
+                                False, False, False)
         super(ProcessDataloggerfile, self).save(*args, **kwargs)
         # def get_actions(self, request):
         #     #Disable delete
@@ -2727,7 +2729,8 @@ def email_text(self):
         return s
 
     def csvheaderShort(self):
-        s = '\" {0} -unit-{1}-processing level-{2}\",'.format(
+        s = 'method,'
+        s += '\" {0} -unit-{1}-processing level-{2}\",'.format(
             self.resultid.resultid.variableid.variablecode,
             self.resultid.resultid.unitsid.unitsname,
             self.resultid.resultid.processing_level.processinglevelcode)
@@ -2736,6 +2739,8 @@ def csvheaderShort(self):
         return s
 
     def csvoutputShort(self):
+        s = '\" {0}\",'.format(
+            self.resultid.resultid.featureactionid.action.method.methodcode)
         s = '{0},'.format(self.datavalue)
         s += '{0}'.format(self.qualitycodecv)
         trvannotation = Timeseriesresultvalueannotations.objects.filter(valueid=self.valueid)
@@ -2807,7 +2812,8 @@ def email_text(self):
         s += 'location- {0}'.format(self.samplingfeaturename)
         return s
     def csvheaderShort(self):
-        s = '\" {0} -unit-{1}-processing level-{2}\",'.format(
+        s = 'method,'
+        s += '\" {0} -unit-{1}-processing level-{2}\",'.format(
             self.variablecode,
             self.unitsabbreviation,
             self.processinglevelcode)
@@ -2832,7 +2838,9 @@ def csvoutput(self):
 
 
     def csvoutputShort(self):
-        s = '{0},'.format(self.datavalue)
+        s = '\" {0}\",'.format(
+            self.resultid.resultid.featureactionid.action.method.methodcode)
+        s += '{0},'.format(self.datavalue)
         s += '{0},'.format(self.qualitycodecv)
         return s
 
@@ -2906,7 +2914,8 @@ def email_text(self):
         return s
 
     def csvheaderShort(self):
-        s = '\" {0} -unit-{1}-processing level-{2}\",'.format(
+        s = 'method,'
+        s += '\" {0} -unit-{1}-processing level-{2}\",'.format(
             self.variablecode,
             self.unitsabbreviation,
             self.processinglevelcode)
@@ -2915,7 +2924,10 @@ def csvheaderShort(self):
         return s
 
     def csvoutputShort(self):
-        s = '{0},'.format(self.datavalue)
+        result = Results.objects.get(resultid=self.resultid)
+        s = '\" {0}\",'.format(
+            result.featureactionid.action.method.methodcode)
+        s += '{0},'.format(self.datavalue)
         s += '{0},'.format(self.qualitycodecv)
         if self.annotationtext:
             s += '\"{0} \",'.format(self.annotationtext)

odm2admin/models.py

@@ -71,7 +71,6 @@
 
 
 					<tr ><th scope="col" class="section">Result Series</td>
-					<th scope="col"  class="sortable column-resultid">id</th>
 					<th scope="col"  class="sortable column-resultid">Variable</th>
 					<th scope="col"  class="sortable column-resultid">Units</th>
 					<th scope="col"  class="sortable column-resultid">Graph Data</th>
@@ -81,7 +80,6 @@
 						{% assign donut 1 %}
 						{% assign done 1 %}
 						<tr class="row1">
-								<td>{{ Result.feature_action }} </td>
 									<td >{{Result.resultid}}</td>
 									<td >{{Result.variableid.variablecode}}</td>
 									<td >{{Result.unitsid}}</td>