Merge pull request #131 from SciML/bump

Bump ModelingToolkit v9 Catalyst v14

Author: ChrisRackauckas

lib/JumpProblemLibrary/src/JumpProblemLibrary.jl

@@ -141,7 +141,7 @@ end
 rsi = rates_sym_to_idx
 rates = params[[rsi[:kon], rsi[:kAon], rsi[:koff], rsi[:kAoff], rsi[:kAp], rsi[:kAdp]]]
 u0 = zeros(Int, 9)
-statesyms = ModelingToolkit.tosymbol.(ModelingToolkit.operation.(states(rs)))
+statesyms = ModelingToolkit.tosymbol.(ModelingToolkit.operation.(unknowns(rs)))
 u0[findfirst(isequal(:S1), statesyms)] = params[1]
 u0[findfirst(isequal(:S2), statesyms)] = params[2]
 u0[findfirst(isequal(:S3), statesyms)] = params[3]
@@ -202,10 +202,10 @@ function construct_genenetwork(N)
     genenetwork
 end
 rs = construct_genenetwork(N)
-u0 = zeros(Int, length(states(rs)))
-statesyms = ModelingToolkit.tosymbol.(ModelingToolkit.operation.(states(rs)))
+u0 = zeros(Int, length(unknowns(rs)))
+statesyms = ModelingToolkit.tosymbol.(ModelingToolkit.operation.(unknowns(rs)))
 for i in 1:(2 * N)
-    u0[findfirst(isequal(G[i]), states(rs))] = 1
+    u0[findfirst(isequal(G[i]), unknowns(rs))] = 1
 end
 tf = 2000.0
 prob = DiscreteProblem(rs, u0, (0.0, tf), eval_module = @__MODULE__)

lib/NonlinearProblemLibrary/Project.toml

@@ -9,7 +9,7 @@ SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 [compat]
 Aqua = "0.8"
 LinearAlgebra = "1.6"
-SciMLBase = "1, 2"
+SciMLBase = "2"
 julia = "1.10"
 
 [extras]

lib/ODEProblemLibrary/Project.toml

@@ -14,7 +14,7 @@ RuntimeGeneratedFunctions = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47"
 [compat]
 Aqua = "0.5"
 DiffEqBase = "6"
-Latexify = "0.15, 0.16"
+Latexify = "0.16"
 ModelingToolkit = "9"
 RuntimeGeneratedFunctions = "0.5"
 julia = "1.10"

lib/SDEProblemLibrary/Project.toml

@@ -11,7 +11,7 @@ SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 
 [compat]
 Aqua = "0.5"
-Catalyst = "13"
+Catalyst = "14"
 DiffEqBase = "6"
 RuntimeGeneratedFunctions = "0.5"
 SciMLBase = "2.0.1"