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‎tests/testthat/_snaps/compare_parameters.md‎

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@@ -49,122 +49,42 @@
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Code
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print(out)
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Output
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+----------------+-----------------------+--------+----------------------+--------+
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| | lm1 | lm2 |
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+----------------+-----------------------+--------+----------------------+--------+
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| Parameter | Estimate (ci) | p | Estimate (ci) | p |
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+================+=======================+========+======================+========+
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| *Groups* |
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+----------------+-----------------------+--------+----------------------+--------+
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| grp (2) | -4.31 (-15.95, 7.32) | 0.465 | 0.32 (-22.56, 23.20) | 0.978 |
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+----------------+-----------------------+--------+----------------------+--------+
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| grp (3) | -1.31 (-13.47, 10.84) | 0.831 | 3.77 (-19.72, 27.26) | 0.752 |
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+----------------+-----------------------+--------+----------------------+--------+
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| *Interactions* |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days * grp (2) | | | -1.01 (-5.35, 3.32) | 0.645 |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days * grp (3) | | | -1.11 (-5.53, 3.31) | 0.621 |
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+----------------+-----------------------+--------+----------------------+--------+
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| *Controls* |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days | 10.44 (8.84, 12.03) | <0.001 | 11.23 (7.87, 14.60) | <0.001 |
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+----------------+-----------------------+--------+----------------------+--------+
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| | | | | |
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+----------------+-----------------------+--------+----------------------+--------+
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| Observations | 180 | | 180 | |
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+----------------+-----------------------+--------+----------------------+--------+
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|Parameter | Coefficient (CI) (lm1)| p (lm1)| Coefficient (CI) (lm2)| p (lm2)|
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|:--------------|----------------------:|-------:|----------------------:|-------:|
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|Groups | | | | |
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|grp (2) | -4.31 (-15.95, 7.32)| 0.465| 0.32 (-22.56, 23.20)| 0.978|
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|grp (3) | -1.31 (-13.47, 10.84)| 0.831| 3.77 (-19.72, 27.26)| 0.752|
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|Interactions | | | | |
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|Days * grp (2) | | | -1.01 ( -5.35, 3.32)| 0.645|
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|Days * grp (3) | | | -1.11 ( -5.53, 3.31)| 0.621|
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|Controls | | | | |
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|Days | 10.44 ( 8.84, 12.03)| <0.001| 11.23 ( 7.87, 14.60)| <0.001|
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| | | | | |
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|Observations | 180| | 180| |
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---
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Code
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print_md(cp)
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Output
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+-------------------------+-----------------------+--------+----------------------+--------+
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| | lm1 | lm2 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| Parameter | Estimate (ci) | p | Estimate (ci) | p |
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+=========================+=======================+========+======================+========+
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| Fixed Effects |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| Days | 10.44 (8.84, 12.03) | <0.001 | 11.23 (7.87, 14.60) | <0.001 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| grp [2] | -4.31 (-15.95, 7.32) | 0.465 | 0.32 (-22.56, 23.20) | 0.978 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| grp [3] | -1.31 (-13.47, 10.84) | 0.831 | 3.77 (-19.72, 27.26) | 0.752 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| Days * grp [2] | | | -1.01 (-5.35, 3.32) | 0.645 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| Days * grp [3] | | | -1.11 (-5.53, 3.31) | 0.621 |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| Random Effects |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| SD (Intercept: Subject) | 37.06 (25.85, 53.13) | | 37.08 (25.85, 53.19) | |
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+-------------------------+-----------------------+--------+----------------------+--------+
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| SD (Residual) | 31.13 (27.89, 34.75) | | 31.30 (28.02, 34.96) | |
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+-------------------------+-----------------------+--------+----------------------+--------+
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---
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Code
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print(out)
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Output
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+----------------+-----------------------+--------+----------------------+--------+
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| | lm1 | lm2 |
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+----------------+-----------------------+--------+----------------------+--------+
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| Parameter | Estimate (ci) | p | Estimate (ci) | p |
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+================+=======================+========+======================+========+
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| *Groups* |
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+----------------+-----------------------+--------+----------------------+--------+
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| grp (1) | 0.00 | | 0.00 | |
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+----------------+-----------------------+--------+----------------------+--------+
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| grp (2) | -4.31 (-15.95, 7.32) | 0.465 | 0.32 (-22.56, 23.20) | 0.978 |
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+----------------+-----------------------+--------+----------------------+--------+
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| grp (3) | -1.31 (-13.47, 10.84) | 0.831 | 3.77 (-19.72, 27.26) | 0.752 |
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+----------------+-----------------------+--------+----------------------+--------+
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| *Interactions* |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days * grp (2) | | | -1.01 (-5.35, 3.32) | 0.645 |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days * grp (3) | | | -1.11 (-5.53, 3.31) | 0.621 |
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+----------------+-----------------------+--------+----------------------+--------+
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| *Controls* |
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+----------------+-----------------------+--------+----------------------+--------+
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| Days | 10.44 (8.84, 12.03) | <0.001 | 11.23 (7.87, 14.60) | <0.001 |
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+----------------+-----------------------+--------+----------------------+--------+
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| | | | | |
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+----------------+-----------------------+--------+----------------------+--------+
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| Observations | 180 | | 180 | |
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+----------------+-----------------------+--------+----------------------+--------+
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---
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Code
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print(out)
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Output
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+----------------+-----------------------+----------------------+
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| Parameter | lm1 | lm2 |
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+================+=======================+======================+
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| *Groups* |
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+----------------+-----------------------+----------------------+
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| grp (1) | 0.00 | 0.00 |
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+----------------+-----------------------+----------------------+
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| grp (2) | -4.31 (-15.95, 7.32) | 0.32 (-22.56, 23.20) |
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+----------------+-----------------------+----------------------+
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| grp (3) | -1.31 (-13.47, 10.84) | 3.77 (-19.72, 27.26) |
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+----------------+-----------------------+----------------------+
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| *Interactions* |
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+----------------+-----------------------+----------------------+
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| Days * grp (2) | | -1.01 (-5.35, 3.32) |
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+----------------+-----------------------+----------------------+
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| Days * grp (3) | | -1.11 (-5.53, 3.31) |
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+----------------+-----------------------+----------------------+
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| *Controls* |
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+----------------+-----------------------+----------------------+
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| Days | 10.44 (8.84, 12.03) | 11.23 (7.87, 14.60) |
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+----------------+-----------------------+----------------------+
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| | | |
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+----------------+-----------------------+----------------------+
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| Observations | 180 | 180 |
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+----------------+-----------------------+----------------------+
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Table: Fixed Effects
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|Parameter | Coefficient (CI) (lm1)| p (lm1)| Coefficient (CI) (lm2)| p (lm2)|
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|:--------------|----------------------:|-------:|----------------------:|-------:|
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|Days | 10.44 ( 8.84, 12.03)| <0.001| 11.23 ( 7.87, 14.60)| <0.001|
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|grp [2] | -4.31 (-15.95, 7.32)| 0.465| 0.32 (-22.56, 23.20)| 0.978|
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|grp [3] | -1.31 (-13.47, 10.84)| 0.831| 3.77 (-19.72, 27.26)| 0.752|
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|Days * grp [2] | | | -1.01 ( -5.35, 3.32)| 0.645|
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|Days * grp [3] | | | -1.11 ( -5.53, 3.31)| 0.621|
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Table: Random Effects
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|Parameter | Coefficient (CI) (lm1)| p (lm1)| Coefficient (CI) (lm2)| p (lm2)|
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|:-----------------------|----------------------:|-------:|----------------------:|-------:|
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|SD (Intercept: Subject) | 37.06 ( 25.85, 53.13)| | 37.08 ( 25.85, 53.19)| |
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|SD (Residual) | 31.13 ( 27.89, 34.75)| | 31.30 ( 28.02, 34.96)| |
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‎tests/testthat/_snaps/include_reference.md‎

Lines changed: 37 additions & 23 deletions
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@@ -39,30 +39,44 @@
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---
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Code
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print_md(out, engine = "tt")
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print_md(out)
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Output
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+--------------+----------------------+----------------------+
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| Parameter | m1 | m2 |
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+==============+======================+======================+
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| (Intercept) | 27.48 (23.43, 31.53) | 27.48 (23.43, 31.53) |
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+--------------+----------------------+----------------------+
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| gear (3) | 0.00 | 0.00 |
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+--------------+----------------------+----------------------+
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| gear (4) | 0.08 (-3.68, 3.83) | 0.08 (-3.68, 3.83) |
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+--------------+----------------------+----------------------+
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| gear (5) | 2.39 (-2.50, 7.29) | 2.39 (-2.50, 7.29) |
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+--------------+----------------------+----------------------+
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| am (0) | 0.00 | 0.00 |
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+--------------+----------------------+----------------------+
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| am (1) | 4.14 (0.42, 7.85) | 4.14 (0.42, 7.85) |
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+--------------+----------------------+----------------------+
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| hp | -0.06 (-0.09, -0.04) | -0.06 (-0.09, -0.04) |
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+--------------+----------------------+----------------------+
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| | | |
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+--------------+----------------------+----------------------+
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| Observations | 32 | 32 |
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+--------------+----------------------+----------------------+
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[1] "|Parameter | m1 | m2 |"
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[2] "|:------------|:--------------------|:--------------------|"
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[3] "|(Intercept) |27.48 (23.43, 31.53) |27.48 (23.43, 31.53) |"
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[4] "|gear (3) | 0.00 | 0.00 |"
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[5] "|gear (4) | 0.08 (-3.68, 3.83) | 0.08 (-3.68, 3.83) |"
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[6] "|gear (5) | 2.39 (-2.50, 7.29) | 2.39 (-2.50, 7.29) |"
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[7] "|am (0) | 0.00 | 0.00 |"
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[8] "|am (1) | 4.14 ( 0.42, 7.85) | 4.14 ( 0.42, 7.85) |"
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[9] "|hp |-0.06 (-0.09, -0.04) |-0.06 (-0.09, -0.04) |"
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[10] "| | | |"
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[11] "|Observations | 32 | 32 |"
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attr(,"format")
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[1] "pipe"
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attr(,"class")
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[1] "knitr_kable" "character"
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---
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Code
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display(out, engine = "tt")
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Output
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[1] "|Parameter | m1 | m2 |"
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[2] "|:------------|:--------------------|:--------------------|"
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[3] "|(Intercept) |27.48 (23.43, 31.53) |27.48 (23.43, 31.53) |"
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[4] "|gear (3) | 0.00 | 0.00 |"
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[5] "|gear (4) | 0.08 (-3.68, 3.83) | 0.08 (-3.68, 3.83) |"
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[6] "|gear (5) | 2.39 (-2.50, 7.29) | 2.39 (-2.50, 7.29) |"
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[7] "|am (0) | 0.00 | 0.00 |"
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[8] "|am (1) | 4.14 ( 0.42, 7.85) | 4.14 ( 0.42, 7.85) |"
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[9] "|hp |-0.06 (-0.09, -0.04) |-0.06 (-0.09, -0.04) |"
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[10] "| | | |"
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[11] "|Observations | 32 | 32 |"
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attr(,"format")
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[1] "pipe"
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attr(,"class")
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[1] "knitr_kable" "character"
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# include_reference, different contrasts
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