try -DONNX_USE_LITE_PROTO=OFF

Author: titaiwangms

tools/python/util/vcpkg_helpers.py

@@ -82,6 +82,14 @@ def add_port_configs(f, has_exception: bool, is_emscripten: bool, enable_minimal
         "-DONNX_USE_LITE_PROTO=ON"
     )"""
         )
+    else:
+        # keep default OFF for non-WebAssembly builds.
+        f.write(
+            r"""
+    list(APPEND VCPKG_CMAKE_CONFIGURE_OPTIONS
+        "-DONNX_USE_LITE_PROTO=OFF"
+    )"""
+        )
 
     f.write(r"""
 endif() # End ONNX-specific block