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Merge pull request #5275 from pybamm-team/25.10.1
Release v25.10.1
2 parents afbb567 + bad1fd5 commit fd26b09

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‎.github/workflows/benchmark_on_push.yml‎

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sudo apt-get update
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sudo apt install gfortran gcc libopenblas-dev
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install python dependencies
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run: |
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python -m uv pip install asv[virtualenv]
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run: uv pip install asv[virtualenv]
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- name: Fetch base branch
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run: |

‎.github/workflows/discussion_autoresponder.yml‎

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discussion:
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types: [created]
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permissions: {}
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jobs:
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steps:
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- name: Run Discussion Autoresponder
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uses: wesleyscholl/discussion-auto-responder@b1a3c1b9a1e3d1b1a3c1b9a1e3d1b1a3c1b9a1e3 # v1.0.8
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uses: actions/github-script@v7
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with:
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GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
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comment_body: "Hi! We have now moved our discussions to [Discourse](https://pybamm.discourse.group/). Please post your question there."
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delay_milliseconds: 0
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script: |
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const discussion = context.payload.discussion;
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const message = "Hi! We have now moved our discussions to [Discourse](https://pybamm.discourse.group/). Please post your question there.";
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const query = `
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mutation($discussionId: ID!, $body: String!) {
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addDiscussionComment(input: {discussionId: $discussionId, body: $body}) {
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comment {
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id
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}
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}
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}
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`;
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await github.graphql(query, {
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discussionId: discussion.node_id,
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body: message,
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});

‎.github/workflows/lychee_url_checker.yml‎

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# use stable version for now to avoid breaking changes
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- name: Lychee URL checker
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uses: lycheeverse/lychee-action@885c65f3dc543b57c898c8099f4e08c8afd178a2 # v2.6.1
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uses: lycheeverse/lychee-action@a8c4c7cb88f0c7386610c35eb25108e448569cb0 # v2.7.0
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with:
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# arguments with file types to check
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args: >-

‎.github/workflows/periodic_benchmarks.yml‎

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sudo apt-get update
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sudo apt-get install gfortran gcc libopenblas-dev
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install python dependencies
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run: |
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python -m uv pip install asv[virtualenv]
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run: uv pip install asv[virtualenv]
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- name: Run benchmarks
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run: |

‎.github/workflows/run_periodic_tests.yml‎

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with:
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python-version: ${{ matrix.python-version }}
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: python -m uv pip install nox[uv]
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run: uv tool install nox
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- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
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run: python -m nox -s unit
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run: nox -s unit
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- name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
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if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
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run: python -m nox -s coverage
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run: nox -s coverage
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- name: Upload coverage report
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token: ${{ secrets.CODECOV_TOKEN }}
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- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
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run: python -m nox -s integration
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run: nox -s integration
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with:
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: python -m uv pip install nox[uv]
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run: uv tool install nox
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- name: Install docs dependencies and run doctests for GNU/Linux
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run: python -m nox -s doctests
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run: nox -s doctests
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run: python -m nox -s docs
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run: nox -s docs
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: python -m uv pip install nox[uv]
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run: uv tool install nox
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- name: Run example notebooks tests for GNU/Linux with Python 3.12
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run: nox -s examples
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python-version: 3.12
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: python -m uv pip install nox[uv]
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run: uv tool install nox
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run: nox -s scripts

‎.github/workflows/scorecard.yml‎

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# Upload the results to GitHub's code scanning dashboard (optional).
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# Commenting out will disable upload of results to your repo's Code Scanning dashboard
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- name: "Upload to code-scanning"
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uses: github/codeql-action/upload-sarif@4e94bd11f71e507f7f87df81788dff88d1dacbfb # v3.29.5
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uses: github/codeql-action/upload-sarif@0499de31b99561a6d14a36a5f662c2a54f91beee # v3.29.5
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‎.github/workflows/test_on_push.yml‎

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python-version: 3.12
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Check style
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python -m uv pip install pre-commit
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pre-commit run -a
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run: uvx pre-commit run -a
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uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
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cache: 'pip'
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: python -m uv pip install nox[uv]
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run: uv tool install nox
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- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
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run: nox -s unit
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run: nox -s coverage
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- name: Upload coverage report
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- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
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run: nox -s integration
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uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6.0.0
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python-version: 3.11
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cache: 'pip'
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: uv tool install nox
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- name: Install docs dependencies and run doctests for GNU/Linux
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run: python -m nox -s doctests
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run: nox -s doctests
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- name: Check if the documentation can be built for GNU/Linux
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- name: Set up uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: uv tool install nox
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cache: 'pip'
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- name: Set up uv
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run: python -m pip install uv
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- uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41 # v7.1.2
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with:
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version: "latest"
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enable-cache: true
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- name: Install nox
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run: uv tool install nox
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‎CHANGELOG.md‎

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# [Unreleased](https://github.com/pybamm-team/PyBaMM/)
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## Features
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## Bug fixes
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# [v25.10.1](https://github.com/pybamm-team/PyBaMM/tree/v25.10.1) - 2025-11-14
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## Features
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- Allow setting initial conditions from `y_slices` of a `Solution` object. ([#5257](https://github.com/pybamm-team/PyBaMM/pull/5257))
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- Added docstring to `FuzzyDict.copy` explaining its return value and behavior. ([#5242](https://github.com/pybamm-team/PyBaMM/pull/5242))
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## Bug fixes
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- Fixed a bug where simulations whose initial conditions violated the events could continue solving. ([#5260](https://github.com/pybamm-team/PyBaMM/pull/5260))
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- Fixed an issues with composite electrode and "swelling only" mechanics sub-models, which were not creating the cell thickness variable. ([#5272](https://github.com/pybamm-team/PyBaMM/pull/5272))
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# [v25.10.0](https://github.com/pybamm-team/PyBaMM/tree/v25.10.0) - 2025-10-29
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## Features

‎CITATION.cff‎

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- "expression tree"
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- "python"
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- "symbolic differentiation"
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version: "25.10.0"
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version: "25.10.1"
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repository-code: "https://github.com/pybamm-team/PyBaMM"
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title: "Python Battery Mathematical Modelling (PyBaMM)"

‎docs/source/user_guide/installation/index.rst‎

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`pre-commit <https://pre-commit.com/index.html>`__ \- dev For managing and maintaining multi-language pre-commit hooks.
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`ruff <https://beta.ruff.rs/docs/>`__ \- dev For code formatting.
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`nox <https://nox.thea.codes/en/stable/>`__ \- dev For running testing sessions in multiple environments.
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`pytest-subtests <https://github.com/pytest-dev/pytest-subtests/>`__ \- dev For subtests pytest fixture.
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`pytest-cov <https://pytest-cov.readthedocs.io/en/stable/>`__ \- dev For calculating test coverage.
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`pytest <https://docs.pytest.org/en/stable/>`__ 6.0.0 dev For running the test suites.
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`pytest <https://docs.pytest.org/en/stable/>`__ 9.0.0 dev For running the test suites (includes subtests support).
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`pytest-doctestplus <https://github.com/scientific-python/pytest-doctestplus>`__ \- dev For running doctests.
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`pytest-xdist <https://pytest-xdist.readthedocs.io/en/latest/>`__ \- dev For running tests in parallel across distributed workers.
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`pytest-mock <https://pytest-mock.readthedocs.io/en/latest/index.html>`__ \- dev Provides a mocker fixture.

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