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[BUG] Mask values exceed 65535 when <code>metric_intersection_over_union()</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1378 In MouseLand/cellpose;

· Chenchao-is-CC opened on Dec 6, 2025

[BUG] difficulty with training custom model on GUI

bugSomething isn't workingSomething isn't working

Status: Open.

#1377 In MouseLand/cellpose;

· lilyhe19 opened on Dec 1, 2025

[FEATURE] Add CLAHE as an Optional Preprocessing Step

enhancementNew feature or requestNew feature or request

Status: Open.

#1376 In MouseLand/cellpose;

· xuefei-wang opened on Nov 27, 2025

Zarr 3 support for distributed

enhancementNew feature or requestNew feature or request

Status: Open.

#1375 In MouseLand/cellpose;

· felixS27 opened on Nov 27, 2025

[combine sam3]

enhancementNew feature or requestNew feature or request

Status: Open.

#1373 In MouseLand/cellpose;

· Nikolu716 opened on Nov 21, 2025

Batch Processing Not Implemented?

bugSomething isn't workingSomething isn't working

Status: Open.

#1372 In MouseLand/cellpose;

· shawn-conquest opened on Nov 18, 2025

Finetuning Cellpose-SAM

enhancementNew feature or requestNew feature or request

Status: Open.

#1353 In MouseLand/cellpose;

· licmn opened on Oct 23, 2025

[FEATURE] Checkpointing

enhancementNew feature or requestNew feature or request

Status: Open.

#1351 In MouseLand/cellpose;

· le1nax opened on Oct 20, 2025

[BUG] ROIs deleted after running CPSAM in v 4.0.8

bugSomething isn't workingSomething isn't working

Status: Open.

#1350 In MouseLand/cellpose;

· totoro7034 opened on Oct 19, 2025

[FEATURE] Does distributed_segmentation supports 2D-multi channel image?

enhancementNew feature or requestNew feature or request

Status: Open.

#1348 In MouseLand/cellpose;

· YueXia-natsu opened on Oct 16, 2025

[BUG] Shape mismatch between masks and output when segmenting z-stack slice-by-slice

bugSomething isn't workingSomething isn't working

Status: Open.

#1345 In MouseLand/cellpose;

· ElpadoCan opened on Oct 9, 2025

[BUG]Error saving new trained model

bugSomething isn't workingSomething isn't working

Status: Open.

#1343 In MouseLand/cellpose;

· Ge0rges opened on Oct 8, 2025