[MNT] testing code in README for correctness #444
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: pytest | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| code-quality: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: actions/setup-python@v6 | |
| with: | |
| python-version: '3.13' | |
| - name: install pre-commit | |
| run: python3 -m pip install pre-commit | |
| - name: Checkout code | |
| uses: actions/checkout@v5 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get changed files | |
| id: changed-files | |
| run: | | |
| CHANGED_FILES=$(git diff --name-only ${{ github.event.pull_request.base.sha }} ${{ github.sha }} | tr '\n' ' ') | |
| echo "CHANGED_FILES=${CHANGED_FILES}" >> $GITHUB_ENV | |
| - name: Print changed files | |
| run: | | |
| echo "Changed files: $CHANGED_FILES" | |
| - name: Run pre-commit on changed files | |
| run: | | |
| if [ -n "$CHANGED_FILES" ]; then | |
| pre-commit run --color always --files $CHANGED_FILES --show-diff-on-failure | |
| else | |
| echo "No changed files to check." | |
| fi | |
| pytest-nosoftdeps: | |
| needs: code-quality | |
| name: nosoftdeps (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434 | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] | |
| fail-fast: false # to not fail all combinations if just one fails | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| shell: bash | |
| run: uv pip install ".[dev]" --no-cache-dir | |
| env: | |
| UV_SYSTEM_PYTHON: 1 | |
| - name: Show dependencies | |
| run: uv pip list | |
| - name: Test with pytest | |
| run: | | |
| pytest ./tests | |
| pytest: | |
| needs: pytest-nosoftdeps | |
| name: (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434 | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] | |
| fail-fast: false # to not fail all combinations if just one fails | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| shell: bash | |
| run: uv pip install ".[dev,all_extras]" --no-cache-dir | |
| env: | |
| UV_SYSTEM_PYTHON: 1 | |
| - name: Show dependencies | |
| run: uv pip list | |
| - name: Test with pytest | |
| run: | | |
| pytest ./tests | |
| codecov: | |
| name: coverage (${{ matrix.python-version }} on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| needs: code-quality | |
| env: | |
| MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434 | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.12"] | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| shell: bash | |
| run: uv pip install ".[dev,all_extras]" --no-cache-dir | |
| env: | |
| UV_SYSTEM_PYTHON: 1 | |
| - name: Show dependencies | |
| run: uv pip list | |
| - name: Generate coverage report | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest --cov=./ --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| # if false in order to skip for now | |
| if: false | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| files: ./coverage.xml | |
| fail_ci_if_error: true | |
| notebooks: | |
| needs: code-quality | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.10', '3.11', '3.12', '3.13', '3.14' ] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v7 | |
| with: | |
| enable-cache: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| shell: bash | |
| run: uv pip install ".[dev,all_extras,notebook_test]" --no-cache-dir | |
| env: | |
| UV_SYSTEM_PYTHON: 1 | |
| - name: Show dependencies | |
| run: uv pip list | |
| # Discover all notebooks | |
| - name: Collect notebooks | |
| id: notebooks | |
| shell: bash | |
| run: | | |
| NOTEBOOKS=$(find cookbook -name '*.ipynb' -print0 | xargs -0 echo) | |
| echo "notebooks=$NOTEBOOKS" >> $GITHUB_OUTPUT | |
| # Run all discovered notebooks with nbmake | |
| - name: Test notebooks | |
| shell: bash | |
| run: | | |
| uv run pytest --reruns 3 --nbmake --nbmake-timeout=3600 -vv ${{ steps.notebooks.outputs.notebooks }} |