UIUCLibrary · henryborchers · Oct 28, 2025 · Oct 28, 2025 · Oct 28, 2025 · Oct 28, 2025
diff --git a/.github/workflows/tox_matrix.yml b/.github/workflows/tox_matrix.yml
@@ -1,16 +1,17 @@
 on: [push, pull_request]
 name: Tox Multi-platform Compatibility Test
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   build:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-latest, windows-2019]
-        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
-        include:
-          - os: macos-latest
-          - os: ubuntu-latest
-          - os: windows-2019
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ['3.10', '3.11', '3.12', '3.13']
       fail-fast: false
     name: Python ${{ matrix.python-version }} ${{ matrix.os }} build
     steps:
@@ -21,9 +22,8 @@ jobs:
           cache: 'pip' # caching pip dependencies
       - name: Install requirements
         run: |
-          pip install wheel
-          pip install -r requirements/requirements_tox.txt
+          pip install uv
       - name: Run tox
-        run: tox -e py -vvv
+        run: uv run --only-group tox --with tox-uv --isolated tox -e py -vvv
         env:
           PIP_EXTRA_INDEX_URL: ${{vars.PIP_EXTRA_INDEX_URL}}
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,8 +1,7 @@
 # Include the license file
-include LICENSE tox.ini README.rst requirements.txt
+include LICENSE tox.ini README.rst
 
 include docs/make.bat docs/Makefile
 
-recursive-include requirements *.txt
 recursive-include docs/source *
 recursive-include tests *.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "dcc_qc"
 version = "0.1.3.dev0"
-requires-python = ">=3.9"
+requires-python = ">=3.10"
 
 readme = "README.rst"
 license = {text = "University of Illinois/NCSA Open Source License"}
@@ -17,12 +17,38 @@ maintainers = [
 ]
 description = "This package is for performing automated quality control tests on file packages"
 classifiers = [
-    "Programming Language :: Python :: 3.8",
-    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
     "License :: OSI Approved :: University of Illinois/NCSA Open Source License",
     "Topic :: System :: Archiving :: Packaging",
 ]
 
+[dependency-groups]
+docs = ["sphinx"]
+type_checking = [
+    "mypy",
+    "lxml",
+]
+
+lint = [
+    "flake8",
+    {include-group = "type_checking"},
+]
+tox = ["tox"]
+test = [
+    "coverage[toml]",
+    "pytest",
+]
+dev = [
+    {include-group = "docs"},
+    {include-group = "lint"},
+    {include-group = "test"},
+    {include-group = "tox"},
+]
+release = ["twine"]
+ci = [
+    {include-group = "release"},
+    {include-group = "dev"},
+]
 
 [tool.setuptools]
 packages = [
@@ -34,6 +60,7 @@ packages = [
     "dcc_qc.reports",
     "dcc_qc.validator",
 ]
+package-dir = {"dcc_qc" = "src/dcc_qc"}
 zip-safe = false
 
 
@@ -60,7 +87,6 @@ testpaths = [
     "tests"
 ]
 
-
-
 [tool.mypy]
 ignore_missing_imports = true
+mypy_path = "src"
diff --git a/requirements-ci.txt b/requirements-ci.txt
diff --git a/requirements.txt b/requirements.txt
diff --git a/requirements/requirements-ci-freeze.txt b/requirements/requirements-ci-freeze.txt
diff --git a/requirements/requirements-ci.txt b/requirements/requirements-ci.txt
diff --git a/requirements/requirements.txt b/requirements/requirements.txt
diff --git a/requirements/requirements_tox.txt b/requirements/requirements_tox.txt
diff --git a/dcc_qc/__init__.py → src/dcc_qc/__init__.py b/dcc_qc/__init__.py → src/dcc_qc/__init__.py
diff --git a/dcc_qc/__main__.py → src/dcc_qc/__main__.py b/dcc_qc/__main__.py → src/dcc_qc/__main__.py
diff --git a/dcc_qc/abs_runner.py → src/dcc_qc/abs_runner.py b/dcc_qc/abs_runner.py → src/dcc_qc/abs_runner.py
diff --git a/dcc_qc/checkers/__init__.py → src/dcc_qc/checkers/__init__.py b/dcc_qc/checkers/__init__.py → src/dcc_qc/checkers/__init__.py
diff --git a/dcc_qc/checkers/abs_checkers.py → src/dcc_qc/checkers/abs_checkers.py b/dcc_qc/checkers/abs_checkers.py → src/dcc_qc/checkers/abs_checkers.py
diff --git a/dcc_qc/checkers/builder.py → src/dcc_qc/checkers/builder.py b/dcc_qc/checkers/builder.py → src/dcc_qc/checkers/builder.py
diff --git a/dcc_qc/checkers/check_suite.py → src/dcc_qc/checkers/check_suite.py b/dcc_qc/checkers/check_suite.py → src/dcc_qc/checkers/check_suite.py
diff --git a/dcc_qc/checkers/error_message.py → src/dcc_qc/checkers/error_message.py b/dcc_qc/checkers/error_message.py → src/dcc_qc/checkers/error_message.py
diff --git a/dcc_qc/checkers/hathi_lab.py → src/dcc_qc/checkers/hathi_lab.py b/dcc_qc/checkers/hathi_lab.py → src/dcc_qc/checkers/hathi_lab.py
diff --git a/dcc_qc/checkers/hathi_lab_factory.py → src/dcc_qc/checkers/hathi_lab_factory.py b/dcc_qc/checkers/hathi_lab_factory.py → src/dcc_qc/checkers/hathi_lab_factory.py
diff --git a/dcc_qc/checkers/hathi_submit.py → src/dcc_qc/checkers/hathi_submit.py b/dcc_qc/checkers/hathi_submit.py → src/dcc_qc/checkers/hathi_submit.py
diff --git a/dcc_qc/checkers/hathi_submit_factory.py → src/dcc_qc/checkers/hathi_submit_factory.py b/dcc_qc/checkers/hathi_submit_factory.py → src/dcc_qc/checkers/hathi_submit_factory.py
diff --git a/dcc_qc/checkers/results.py → src/dcc_qc/checkers/results.py b/dcc_qc/checkers/results.py → src/dcc_qc/checkers/results.py
diff --git a/dcc_qc/checkers/utils.py → src/dcc_qc/checkers/utils.py b/dcc_qc/checkers/utils.py → src/dcc_qc/checkers/utils.py
diff --git a/dcc_qc/checkers/validator_factory.py → src/dcc_qc/checkers/validator_factory.py b/dcc_qc/checkers/validator_factory.py → src/dcc_qc/checkers/validator_factory.py
diff --git a/dcc_qc/cli.py → src/dcc_qc/cli.py b/dcc_qc/cli.py → src/dcc_qc/cli.py
diff --git a/dcc_qc/configure_logging.py → src/dcc_qc/configure_logging.py b/dcc_qc/configure_logging.py → src/dcc_qc/configure_logging.py
diff --git a/dcc_qc/hathi_qc_runner.py → src/dcc_qc/hathi_qc_runner.py b/dcc_qc/hathi_qc_runner.py → src/dcc_qc/hathi_qc_runner.py
diff --git a/dcc_qc/packages/__init__.py → src/dcc_qc/packages/__init__.py b/dcc_qc/packages/__init__.py → src/dcc_qc/packages/__init__.py
diff --git a/dcc_qc/packages/abs_package.py → src/dcc_qc/packages/abs_package.py b/dcc_qc/packages/abs_package.py → src/dcc_qc/packages/abs_package.py
diff --git a/dcc_qc/packages/abs_package_factory.py → src/dcc_qc/packages/abs_package_factory.py b/dcc_qc/packages/abs_package_factory.py → src/dcc_qc/packages/abs_package_factory.py
diff --git a/dcc_qc/packages/exceptions.py → src/dcc_qc/packages/exceptions.py b/dcc_qc/packages/exceptions.py → src/dcc_qc/packages/exceptions.py
diff --git a/dcc_qc/packages/hathi_lab.py → src/dcc_qc/packages/hathi_lab.py b/dcc_qc/packages/hathi_lab.py → src/dcc_qc/packages/hathi_lab.py
diff --git a/dcc_qc/packages/hathi_submit.py → src/dcc_qc/packages/hathi_submit.py b/dcc_qc/packages/hathi_submit.py → src/dcc_qc/packages/hathi_submit.py
diff --git a/dcc_qc/packages/package_factory.py → src/dcc_qc/packages/package_factory.py b/dcc_qc/packages/package_factory.py → src/dcc_qc/packages/package_factory.py
diff --git a/dcc_qc/packages/utils.py → src/dcc_qc/packages/utils.py b/dcc_qc/packages/utils.py → src/dcc_qc/packages/utils.py
diff --git a/dcc_qc/process.py → src/dcc_qc/process.py b/dcc_qc/process.py → src/dcc_qc/process.py
diff --git a/dcc_qc/profiles/__init__.py → src/dcc_qc/profiles/__init__.py b/dcc_qc/profiles/__init__.py → src/dcc_qc/profiles/__init__.py
diff --git a/dcc_qc/profiles/hathi_lab.py → src/dcc_qc/profiles/hathi_lab.py b/dcc_qc/profiles/hathi_lab.py → src/dcc_qc/profiles/hathi_lab.py
diff --git a/dcc_qc/profiles/hathi_submit.py → src/dcc_qc/profiles/hathi_submit.py b/dcc_qc/profiles/hathi_submit.py → src/dcc_qc/profiles/hathi_submit.py
diff --git a/dcc_qc/profiles/profile.py → src/dcc_qc/profiles/profile.py b/dcc_qc/profiles/profile.py → src/dcc_qc/profiles/profile.py
diff --git a/dcc_qc/profiles/profile_factory.py → src/dcc_qc/profiles/profile_factory.py b/dcc_qc/profiles/profile_factory.py → src/dcc_qc/profiles/profile_factory.py
diff --git a/dcc_qc/profiles/utils.py → src/dcc_qc/profiles/utils.py b/dcc_qc/profiles/utils.py → src/dcc_qc/profiles/utils.py
diff --git a/dcc_qc/reports/__init__.py → src/dcc_qc/reports/__init__.py b/dcc_qc/reports/__init__.py → src/dcc_qc/reports/__init__.py
diff --git a/dcc_qc/reports/handler.py → src/dcc_qc/reports/handler.py b/dcc_qc/reports/handler.py → src/dcc_qc/reports/handler.py
diff --git a/dcc_qc/reports/manager.py → src/dcc_qc/reports/manager.py b/dcc_qc/reports/manager.py → src/dcc_qc/reports/manager.py
diff --git a/dcc_qc/runner.py → src/dcc_qc/runner.py b/dcc_qc/runner.py → src/dcc_qc/runner.py
diff --git a/dcc_qc/task_manager.py → src/dcc_qc/task_manager.py b/dcc_qc/task_manager.py → src/dcc_qc/task_manager.py
diff --git a/dcc_qc/task_states/__init__.py → src/dcc_qc/task_states/__init__.py b/dcc_qc/task_states/__init__.py → src/dcc_qc/task_states/__init__.py
diff --git a/dcc_qc/task_states/abs_state.py → src/dcc_qc/task_states/abs_state.py b/dcc_qc/task_states/abs_state.py → src/dcc_qc/task_states/abs_state.py
diff --git a/dcc_qc/task_states/complete.py → src/dcc_qc/task_states/complete.py b/dcc_qc/task_states/complete.py → src/dcc_qc/task_states/complete.py
diff --git a/dcc_qc/task_states/empty.py → src/dcc_qc/task_states/empty.py b/dcc_qc/task_states/empty.py → src/dcc_qc/task_states/empty.py
diff --git a/dcc_qc/task_states/queued.py → src/dcc_qc/task_states/queued.py b/dcc_qc/task_states/queued.py → src/dcc_qc/task_states/queued.py
diff --git a/dcc_qc/task_states/statuses.py → src/dcc_qc/task_states/statuses.py b/dcc_qc/task_states/statuses.py → src/dcc_qc/task_states/statuses.py
diff --git a/dcc_qc/task_states/working.py → src/dcc_qc/task_states/working.py b/dcc_qc/task_states/working.py → src/dcc_qc/task_states/working.py
diff --git a/dcc_qc/tasks.py → src/dcc_qc/tasks.py b/dcc_qc/tasks.py → src/dcc_qc/tasks.py
diff --git a/dcc_qc/validation_processors.py → src/dcc_qc/validation_processors.py b/dcc_qc/validation_processors.py → src/dcc_qc/validation_processors.py
diff --git a/dcc_qc/validator/__init__.py → src/dcc_qc/validator/__init__.py b/dcc_qc/validator/__init__.py → src/dcc_qc/validator/__init__.py
diff --git a/dcc_qc/validator/validator.py → src/dcc_qc/validator/validator.py b/dcc_qc/validator/validator.py → src/dcc_qc/validator/validator.py
diff --git a/tox.ini b/tox.ini
@@ -1,13 +1,13 @@
 [tox]
-envlist = py39, py310, py311, py312, py313
+envlist = py310, py311, py312, py313
 
 
 [pytest]
 testpaths = tests
 addopts = --verbose
 
 [testenv]
-deps = pytest
+dependency_groups = test
 commands = {envbindir}/pytest  --basetemp={envtmpdir}/pytest {posargs}
 
 [testenv:docs]

diff --git a/uv.lock b/uv.lock
diff --git a/vars/runJenkinsPipeline.groovy b/vars/runJenkinsPipeline.groovy