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Make deduplicate a separate rake task and prevent gradle errors
Deduplication should happen as a depenedency of installing default gems. In the
current workflow we have a top level gradle task for packaging which calls out
to rake. Rake then invokes a *separate* gradle process. When we modify the jruby
default, when the separate gradle process goes to check of jruby is installed,
it sees a modified jruby and tries to re-install. We work around this by
changing how gradle detects if jruby is required to be installed.
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