Update binning tutorial #6409
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Update binning tutorial #6409
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- Add vinisalazar
- Create images directory - Point readers to metagenomics-assembly dir as prerequisite
- References were incorrectly pointing to MEGAHIT
vinisalazar
requested review from
bebatut,
paulzierep and
shiltemann
as code owners
Code review from @shiltemann
paulzierep
previously approved these changes
Nov 17, 2025
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| @@ -1,3 +1,14 @@ | |||
| @article{nissen2021improved, | |||
Contributor
| > <hands-on-title>Individual binning of short-reads with MetaBAT 2</hands-on-title> | ||
| > 1. {% tool [MetaBAT 2](toolshed.g2.bx.psu.edu/repos/iuc/megahit/megahit/1.2.9+galaxy0) %} with parameters: | ||
| > 1. {% tool [MetaBAT 2](https://toolshed.g2.bx.psu.edu/view/iuc/metabat2/01f02c5ddff8) %} with parameters: |
Contributor
There was a problem hiding this comment.
🚫 [GTN Lint] <GTN:009> reported by reviewdog 🐶
You have used an invalid tool URL, it should be of the form "toolshed.g2.bx.psu.edu/repos/{owner}/{repo}/{tool}/{version}" (or an internal tool ID) so, please double check.
Suggested change
| > 1. {% tool [MetaBAT 2](https://toolshed.g2.bx.psu.edu/view/iuc/metabat2/01f02c5ddff8) %} with parameters: | |
| > 1. {% tool [MetaBAT 2](https://toolshed.g2.bx.psu.edu/view/iuc/metabat2/01f02c5ddff8) %} with parameters: |
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Follow-up to #6408
Work for the FAIRyMAGs 2025 hackathon
Task: update binning tutorial
Summary of changes:
Submitting as a draft for now, will mark as ready when I'm done