[Server] Decouple Protocol from TransportInterface for reusability #160
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Decouple the Protocol class from direct dependency on TransportInterface to support server instance reuse across multiple transport mechanisms.
Motivation and Context
Currently, the Protocol class can only be connected to a single transport instance due to internal state management and restrictions. Once connected, it cannot be reused with another transport. This change removes that limitation to allow a single Protocol instance to be used with multiple transports.The same issue exists in the TypeScript SDK: modelcontextprotocol/typescript-sdk#961
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