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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: announcement robot message and image
#4712 opened Nov 7, 2025 by cmeesters Loading…
3
perf: autobump bio/varscan/somatic/environment.yaml bio/varscan/somatic
#4711 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/toulligqc/environment.yaml bio/toulligqc
#4710 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/snpeff/annotate/environment.yaml bio/snpeff/annotate
#4709 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/snpeff/download/environment.yaml bio/snpeff/download
#4708 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/pyfastaq/replace_bases/environment.yaml bio/pyfastaq/replace_bases
#4707 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/ngscheckmate/ncm/environment.yaml bio/ngscheckmate/ncm
#4705 opened Nov 7, 2025 by snakedeploy-bot bot Loading…
1
feat: update snpeff wrapper
#4695 opened Nov 5, 2025 by FelixMoelder Loading…
7 tasks done
6
fix: resolve 'Couldn't locate file' error with input BAM with extra delimiters
#4682 opened Oct 30, 2025 by andrewgull Loading…
7 tasks done
14
feat: GATK Meta-wrapper update to follow pathvars
#4666 opened Oct 21, 2025 by tdayris Loading…
7 tasks done
3
feat: Salmon-tximport meta-wrapper pathvars update
#4665 opened Oct 20, 2025 by tdayris Loading…
6 of 7 tasks
6
fix: remove unecessary deps
#4656 opened Oct 10, 2025 by fgvieira Loading…
7 tasks done
5
feat: allow setting launchDir in params
#4638 opened Oct 9, 2025 by tedil Loading…
14
fix: add version constraint to utils/nextflow env yaml
#4637 opened Oct 8, 2025 by tedil Loading…
3
perf: autobump bio/varscan/somatic bio/varscan/somatic
#4604 opened Sep 19, 2025 by snakedeploy-bot bot Loading…
2
perf: autobump bio/snpeff/download bio/snpeff/download
#4600 opened Sep 19, 2025 by snakedeploy-bot bot Loading…
2
perf: autobump bio/snpeff/annotate bio/snpeff/annotate
#4578 opened Sep 19, 2025 by snakedeploy-bot bot Loading…
2
fix: Support both reference.dict and reference.fasta.dict in GRIDSS wrappers
#4426 opened Aug 19, 2025 by RitzelC Loading…
15
perf: autobump bio/pyfastaq/replace_bases bio/pyfastaq/replace_bases
#4000 opened Apr 11, 2025 by snakedeploy-bot bot Loading…
2
feat: Add mmseqs2 main workflows
#3981 opened Apr 4, 2025 by fgvieira Loading…
7 tasks done
10
perf: autobump bio/ngscheckmate/ncm bio/ngscheckmate/ncm
#3542 opened Dec 13, 2024 by snakedeploy-bot bot Loading…
2
feat: bowtie2 can now sort with samtools and picard Stale
#3518 opened Dec 3, 2024 by jlanga Loading…
7 tasks done
43
feat: added wrapper for Paraphase Stale
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
75
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
32
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
14
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