v0.9.14

What's Changed

• Documentation update: manysketch --force allows use of FASTA files in more than one sketch by @mlovci in https://github.com/sourmash-bio/
• MRG: update RocksDB docs with a reference to sourmash v4.9.0 compat by @ctb in #658
• MRG: more docs updates: skip-mers and scaled. by @ctb in #663
• MRG: fix match filtering in manysearch_rocksdb by @ctb in #661
• MRG: report % of target matched by query by @bluegenes in #641
• Pub mod search_significance and utils by @olgabot in #657
• MRG: add average_containment and cosine sim to pairwise and multisearch by @bluegenes in #646

Developer updates

• MRG: bump version to 0.9.14-dev by @ctb in #593
• MRG: fix pyproject.toml version to 0.9.14-dev by @ctb in #594
• MRG: remove ORCID from authors table in pyproject.toml by @ctb in #603
• MRG: fix black formatting by @ctb in #618
• MRG: update zip version to 2.5 by @bluegenes in #635
• MRG: pin rust version to match sourmash by @ctb in #636
• MRG: update for sourmash r0.20.0 by @ctb in #627
• upd rust to 1.75 for zip compatibility by @bluegenes in #654
• MRG: remove dependabot ignore for zip; update to 4.2 by @bluegenes in #668
• MRG: bump version to 0.9.14 by @ctb in #703

Automated updates

• Bump getset from 0.1.3 to 0.1.4 by @dependabot[bot] in #596
• Bump serde_json from 1.0.135 to 1.0.137 by @dependabot[bot] in #595
• Bump log from 0.4.22 to 0.4.25 by @dependabot[bot] in #597
• Bump rustworkx-core from 0.15.1 to 0.16.0 by @dependabot[bot] in #598
• Bump tempfile from 3.15.0 to 3.16.0 by @dependabot[bot] in #600
• Bump serde_json from 1.0.137 to 1.0.138 by @dependabot[bot] in #599
  sourmash_plugin_branchwater/pull/601
• Bump tempfile from 3.16.0 to 3.17.1 by @dependabot[bot] in #605
• Bump anyhow from 1.0.95 to 1.0.96 by @dependabot[bot] in #612
• Bump serde from 1.0.217 to 1.0.218 by @dependabot[bot] in #611
• Bump serde_json from 1.0.138 to 1.0.139 by @dependabot[bot] in #610
• Bump log from 0.4.25 to 0.4.26 by @dependabot[bot] in #609
• Bump log from 0.4.26 to 0.4.27 by @dependabot[bot] in #623
• Bump tempfile from 3.17.1 to 3.19.1 by @dependabot[bot] in #626
• Bump serde from 1.0.218 to 1.0.219 by @dependabot[bot] in #621
• Bump rust_decimal from 1.36.0 to 1.37.1 by @dependabot[bot] in #625
• Bump pyo3 from 0.23.4 to 0.24.0 by @dependabot[bot] in #619
• Bump rust_decimal_macros from 1.36.0 to 1.37.1 by @dependabot[bot] in #624
• Bump getset from 0.1.4 to 0.1.5 by @dependabot[bot] in #614
• Bump serde_json from 1.0.139 to 1.0.140 by @dependabot[bot] in #616
• Bump anyhow from 1.0.96 to 1.0.97 by @dependabot[bot] in #615
• Bump pyo3 from 0.24.1 to 0.24.2 by @dependabot[bot] in #643
• Bump assert_cmd from 2.0.16 to 2.0.17 by @dependabot[bot] in #639
• Bump anyhow from 1.0.97 to 1.0.98 by @dependabot[bot] in #638
• Bump tempfile from 3.19.1 to 3.20.0 by @dependabot[bot] in #648
• Bump niffler from 2.7.0 to 3.0.0 by @dependabot[bot] in #649
• Bump pyo3 from 0.24.2 to 0.25.0 by @dependabot[bot] in #650
• Bump camino from 1.1.9 to 1.1.10 by @dependabot[bot] in #656
• Update pytest requirement from <8.4.0,>=6.2.4 to >=6.2.4,<8.5.0 by @dependabot[bot] in #655
• Bump rust_decimal from 1.37.1 to 1.37.2 by @dependabot[bot] in #660
• Bump pyo3 from 0.25.0 to 0.25.1 by @dependabot[bot] in #659
• Bump getset from 0.1.5 to 0.1.6 by @dependabot[bot] in #667
• Bump env_logger from 0.11.6 to 0.11.8 by @dependabot[bot] in #670
• Bump sourmash from 0.20.0 to 0.21.0 by @dependabot[bot] in #669
• Bump serde_json from 1.0.140 to 1.0.141 by @dependabot[bot] in #674
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #676
• Bump serde_json from 1.0.141 to 1.0.142 by @dependabot[bot] in #675
• Bump camino from 1.1.10 to 1.1.11 by @dependabot[bot] in #677
• Bump glob from 0.3.2 to 0.3.3 by @dependabot[bot] in #678
• Bump serde_json from 1.0.142 to 1.0.143 by @dependabot[bot] in #686
• Bump tempfile from 3.20.0 to 3.21.0 by @dependabot[bot] in #687
• Bump pyo3 from 0.25.1 to 0.26.0 by @dependabot[bot] in #691
• Bump camino from 1.1.11 to 1.1.12 by @dependabot[bot] in #690
• Bump anyhow from 1.0.98 to 1.0.99 by @dependabot[bot] in #682
• Bump log from 0.4.27 to 0.4.28 by @dependabot[bot] in #693
• Bump rust_decimal_macros from 1.37.1 to 1.38.0 by @dependabot[bot] in #701
• Bump serde from 1.0.219 to 1.0.224 by @dependabot[bot] in #700
• Bump rust_decimal from 1.37.2 to 1.38.0 by @dependabot[bot] in #696
• Bump tempfile from 3.21.0 to 3.22.0 by @dependabot[bot] in #697
• Bump serde_json from 1.0.143 to 1.0.145 by @dependabot[bot] in #698
• Bump camino from 1.1.12 to 1.2.0 by @dependabot[bot] in #699
• Update pytest-cov requirement from <7.0,>=2.12 to >=2.12,<8.0 by @dependabot[bot] in #694

New Contributors

• @mlovci made their first contribution in #601

Full Changelog: v0.9.13...v0.9.14